STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_497TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein. (392 aa)    
Predicted Functional Partners:
LO55_498
Binding--dependent transport system inner membrane component family protein.
 
 0.990
ntrB
ntrB: nitrate ABC transporter, permease protein.
 
 0.954
ntrB-2
ntrB: nitrate ABC transporter, permease protein.
 
 0.946
LO55_818
Binding--dependent transport system inner membrane component family protein.
 
 0.941
LO55_2054
Binding--dependent transport system inner membrane component family protein.
 
 0.935
LO55_2920
Binding--dependent transport system inner membrane component family protein.
 
 0.927
LO55_2627
ntrCD: nitrate ABC transporter, ATP-binding s C and D family protein.
 
 0.918
LO55_495
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
    0.894
LO55_4928
ntrCD: nitrate ABC transporter, ATP-binding s C and D family protein.
 
 0.884
LO55_2055
ABC transporter family protein.
 
 0.881
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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