Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_4983Hypothetical protein. (219 aa)    
Predicted Functional Partners:
thiS
thiS: thiamine biosynthesis protein ThiS.
  
 0.860
LO55_1157
Aminotransferase class-V family protein.
   
 0.854
LO55_3170
moaE family protein.
  
 0.829
LO55_1313
thiF family protein.
 
 
 0.804
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
 
 0.800
LO55_5149
Hypothetical protein.
  
     0.751
epsD
cis_trans_EpsD: peptidyl-prolyl cis-trans isomerase, EpsD family.
  
   
 0.750
moaD
moaD: molybdopterin converting factor, subunit 1.
   
 0.731
epsI-2
epsI_fam: EpsI family protein.
  
     0.727
LO55_5112
Hypothetical protein.
  
     0.723
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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