Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_500Outer membrane usher family protein. (814 aa)    
Predicted Functional Partners:
LO55_501
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
 
 0.999
LO55_499
Spore Coat Protein U domain protein.
 
 
 0.991
LO55_502
Spore Coat Protein U domain protein.
 
 
 0.991
LO55_3216
Type IV secretory pathway, VirB3-like family protein.
   
    0.738
LO55_3220
trbL/VirB6 plasmid conjugal transfer family protein.
   
    0.712
LO55_3217
virB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family protein.
   
    0.709
LO55_3222
virB8 family protein.
   
    0.708
LO55_3223
Conjugal transfer family protein.
   
    0.701
LO55_1038
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
 
  
 0.689
LO55_3224
Bacterial conjugation TrbI-like family protein.
   
    0.682
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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