Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_508Catalase family protein. (979 aa)    
Predicted Functional Partners:
LO55_506
FAD dependent oxidoreductase family protein.
 
     0.952
ligD
NHEJ_ligase_prk: DNA ligase D.
  
    0.581
LO55_4786
Phage Tail Collar domain protein.
  
     0.544
LO55_4788
Acetyltransferase family protein.
  
     0.543
pulA
Alpha-1,6-glucosidase; Pullulanase-type domain protein; pullul_strch: alpha-1,6-glucosidases, pullulanase-type domain protein; Belongs to the glycosyl hydrolase 13 family.
  
    0.485
LO55_3938
Acetyltransferase family protein.
  
     0.456
amy1.2
Alpha-amylase type B isozyme.
  
    0.454
LO55_4785
swm_rep_I: cyanobacterial long repeat domain protein.
  
     0.450
LO55_1121
Phytase family protein.
  
     0.418
LO55_2311
Alpha amylase, catalytic domain protein.
  
    0.410
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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