STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_5083Zinc-binding dehydrogenase family protein. (329 aa)    
Predicted Functional Partners:
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
  
 0.787
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
 0.776
LO55_3991
Zinc-binding dehydrogenase family protein.
  
     0.759
LO55_5084
Antibiotic biosynthesis monooxygenase family protein.
    
  0.757
LO55_4244
enoyl-CoA hydratase/isomerase family protein.
  
 0.732
LO55_977
enoyl-CoA hydratase/isomerase family protein.
  
 0.732
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
     
 0.726
LO55_5082
Bacterial regulatory, arsR family protein.
 
     0.643
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase.
 
 0.626
LO55_5080
cit_synth_II: 2-methylcitrate synthase/citrate synthase II family protein; Belongs to the citrate synthase family.
   
 0.565
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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