STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_5084Antibiotic biosynthesis monooxygenase family protein. (108 aa)    
Predicted Functional Partners:
LO55_5083
Zinc-binding dehydrogenase family protein.
    
  0.757
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
    
 0.704
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
  0.652
LO55_2524
Heme oxygenase family protein.
  
  
  0.643
bfr
Bacterioferritin; Iron-storage protein.
     
 0.539
LO55_4844
Rubrerythrin family protein.
     
 0.539
LO55_4820
PGAP1-like family protein.
  
  
  0.536
LO55_5082
Bacterial regulatory, arsR family protein.
       0.532
LO55_2641
Ferritin-like domain protein; Belongs to the Dps family.
  
 
 0.444
LO55_5154
AMP-binding enzyme family protein.
  
  
 0.423
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.