STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_5086Hypothetical protein. (102 aa)    
Predicted Functional Partners:
LO55_5085
Sss: transporter, solute:sodium symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.996
LO55_1876
Na_symport_lg: putative sodium:solute symporter, VC_2705 subfamily protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.946
aceB
malate_syn_A: malate synthase A; Belongs to the malate synthase family.
   
    0.862
acs
acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.768
LO55_3427
AMP-binding enzyme family protein.
  
  
 0.768
prpR
propionate_PrpR: propionate catabolism operon regulatory protein PrpR.
       0.516
LO55_1019
kpsF: sugar isomerase, KpsF/GutQ family protein; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  
 0.426
LO55_91
CBS domain protein.
  
  
 0.426
aceA
Isocit_lyase: isocitrate lyase.
   
    0.412
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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