Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_5115Hypothetical protein; Type II secretion system (T2SS), E, N-terminal domain protein. (561 aa)    
Predicted Functional Partners:
LO55_5116
Type II secretion system (T2SS), F family protein.
 
 
 0.989
gspF
gspF: type II secretion system protein F.
 
 
 0.953
LO55_446
Type II secretion system (T2SS), F family protein.
 
 
 0.953
LO55_5108
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein.
 
 0.951
LO55_4439
Type II secretion system (T2SS), F family protein.
 
 
 0.948
gspG-2
typeII_sec_gspG: type II secretion system protein G.
 
 0.934
LO55_5110
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
 
 
 
 0.933
LO55_5109
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein.
 
 0.919
LO55_5107
Hypothetical protein.
 
 0.908
LO55_460
Type IV leader peptidase family protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.887
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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