Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_5129Alginate lyase family protein. (668 aa)    
Predicted Functional Partners:
LO55_5128
wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family protein; Belongs to the glycosyltransferase 26 family.
       0.689
LO55_5130
Glycosyl transferases group 1 family protein.
       0.679
LO55_5131
Hypothetical protein.
 
     0.598
LO55_5132
Glycosyl transferases group 1 family protein.
 
     0.574
galE
galE: UDP-glucose 4-epimerase GalE; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.513
LO55_5125
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
       0.507
LO55_5126
Nucleotidyl transferase family protein.
  
    0.497
LO55_5057
Peptidase S24-like family protein.
  
     0.401
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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