Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xrt8TM_EpsH: exosortase family protein. (334 aa)    
Predicted Functional Partners:
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.980
epsI-2
epsI_fam: EpsI family protein.
 
     0.954
LO55_5144
Chain length determinant family protein.
 
     0.937
epsG
epsG: chain length determinant protein tyrosine kinase EpsG.
 
    0.919
epsD
cis_trans_EpsD: peptidyl-prolyl cis-trans isomerase, EpsD family.
 
 
   0.890
epsE
epsE: polysaccharide export protein EpsE.
 
     0.877
LO55_5149
Hypothetical protein.
 
     0.827
prsT
PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein.
 
     0.782
LO55_1319
pepcterm_ChnLen: polysaccharide chain length determinant, PEP-CTERM locus subfamily protein.
 
     0.755
LO55_1321
Hypothetical protein.
 
     0.755
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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