STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
epsEepsE: polysaccharide export protein EpsE. (262 aa)    
Predicted Functional Partners:
LO55_5144
Chain length determinant family protein.
 
 0.995
LO55_5148
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
 
 
 0.990
LO55_1349
EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase family protein.
 
 
 0.983
epsG
epsG: chain length determinant protein tyrosine kinase EpsG.
 
 0.962
LO55_1319
pepcterm_ChnLen: polysaccharide chain length determinant, PEP-CTERM locus subfamily protein.
 
 0.951
LO55_5125
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.922
LO55_1317
Polysaccharide biosynthesis/export family protein.
  
  
 
0.900
LO55_1320
AAA domain protein.
 
 0.886
epsD
cis_trans_EpsD: peptidyl-prolyl cis-trans isomerase, EpsD family.
 
     0.885
LO55_5149
Hypothetical protein.
 
  
  0.879
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.