Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
epsDcis_trans_EpsD: peptidyl-prolyl cis-trans isomerase, EpsD family. (362 aa)    
Predicted Functional Partners:
xrt
8TM_EpsH: exosortase family protein.
 
 
   0.890
LO55_5144
Chain length determinant family protein.
 
    0.889
epsE
epsE: polysaccharide export protein EpsE.
 
     0.885
epsI-2
epsI_fam: EpsI family protein.
 
     0.884
LO55_5149
Hypothetical protein.
 
     0.848
LO55_5150
CAAX protease self-immunity family protein.
 
     0.771
LO55_1316
Acetyltransferase family protein.
  
   
 0.759
LO55_1312
Putative long-chain N-acyl amino acid synthase.
  
   
 0.750
LO55_4983
Hypothetical protein.
  
   
 0.750
epsG
epsG: chain length determinant protein tyrosine kinase EpsG.
 
     0.727
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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