STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ggtG_glut_trans: gamma-glutamyltransferase. (618 aa)    
Predicted Functional Partners:
LO55_1548
Glutamine amidotransferases class-II family protein.
     
 0.763
uca
Urea_carbox: urea carboxylase.
   
 
 0.759
LO55_4259
Hydantoinase/oxoprolinase family protein.
 
  
 0.754
LO55_4831
ahpC/TSA family protein.
  
  
 0.716
cphA
Cya_phycin_syn: cyanophycin synthetase; Belongs to the MurCDEF family.
    
  0.692
cphA-2
Cya_phycin_syn: cyanophycin synthetase.
    
  0.692
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
    
  0.692
cphA-3
Cya_phycin_syn: cyanophycin synthetase.
    
  0.692
cphA-4
Cya_phycin_syn: cyanophycin synthetase.
    
  0.692
gshB
Glut_syn: glutathione synthase; Belongs to the prokaryotic GSH synthase family.
    
 0.691
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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