Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_5186Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase. (295 aa)    
Predicted Functional Partners:
hyi
OH-pyruv-isom: hydroxypyruvate isomerase; Belongs to the hyi family.
 
 0.955
gcl-2
Glyox_carbo_lig: glyoxylate carboligase.
 
 
 0.948
gcl
Glyox_carbo_lig: glyoxylate carboligase; Belongs to the TPP enzyme family.
 
 
 0.938
hyi-2
OH-pyruv-isom: hydroxypyruvate isomerase.
 
 0.867
LO55_3336
Glycerate kinase family protein; Belongs to the glycerate kinase type-1 family.
  
 
 0.858
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 
 0.768
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
  
 
 0.765
LO55_1501
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
 
  
  0.738
hprA
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.738
LO55_1001
4Fe-4S dicluster domain protein.
    
 0.715
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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