STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_520NADH:flavin oxidoreductase / NADH oxidase family protein. (365 aa)    
Predicted Functional Partners:
LO55_101
Electron transfer flavodomain protein.
  
 
 0.722
LO55_4020
Electron transfer flavodomain protein.
  
 
 0.722
LO55_1548
Glutamine amidotransferases class-II family protein.
    
 0.714
LO55_236
Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.657
LO55_100
Electron transfer flavoFAD-binding domain protein.
   
 
 0.615
LO55_4019
Electron transfer flavoFAD-binding domain protein.
   
 
 0.615
LO55_522
Hypothetical protein.
     
 0.562
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 
 0.494
uca
Urea_carbox: urea carboxylase.
 
  
  0.462
LO55_1468
Nitroreductase family protein.
    
 0.452
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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