STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_568Hypothetical protein. (106 aa)    
Predicted Functional Partners:
LO55_569
Hypothetical protein.
 
  
 0.983
LO55_2641
Ferritin-like domain protein; Belongs to the Dps family.
  
    0.875
LO55_2421
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
    0.866
LO55_1848
osmo_induc_OsmC: peroxiredoxin, OsmC subfamily protein.
  
    0.800
LO55_4842
Hypothetical protein.
  
  
 0.786
LO55_570
Hypothetical protein.
       0.773
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
       0.669
LO55_2419
spoVR like family protein.
   
    0.653
LO55_5091
Helix-turn-helix family protein.
   
  
 0.589
LO55_571
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
       0.572
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.