STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_571Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family. (750 aa)    
Predicted Functional Partners:
LO55_2303
Alpha amylase, catalytic domain protein.
 
  
 0.737
LO55_3942
Glycosyl transferases group 1 family protein.
  
 0.714
amy1.2
Alpha-amylase type B isozyme.
 
  
 0.680
LO55_3936
Thioredoxin family protein.
  
 
  0.675
LO55_3322
pfkB carbohydrate kinase family protein.
  
 
 0.671
LO55_1629
Hypothetical protein.
    
 
 0.668
LO55_2311
Alpha amylase, catalytic domain protein.
    
 0.666
LO55_4204
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein.
 
  
 0.665
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.657
LO55_1775
pfkB carbohydrate kinase family protein.
  
 
 0.653
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.