Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_576tonB-dependent Receptor Plug domain protein. (722 aa)    
Predicted Functional Partners:
LO55_23
tonB-dependent Receptor Plug domain protein.
  
  
  0.751
LO55_3704
tonB dependent receptor family protein.
  
     0.728
LO55_758
tonB dependent receptor family protein.
  
  
 0.700
LO55_3507
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
   0.689
LO55_242
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
   0.683
LO55_577
tonB dependent receptor family protein.
 
  
  0.682
LO55_2924
Hypothetical protein.
  
     0.676
LO55_1535
Hypothetical protein.
  
     0.657
LO55_2952
Hypothetical protein.
  
     0.657
LO55_2277
Tubulin like family protein.
  
     0.652
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.