Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LO55_5824Fe-4S dicluster domain protein. (410 aa)    
Predicted Functional Partners:
LO55_583
FAD binding domain protein.
 
 
 0.996
LO55_584
FAD binding domain protein.
 
 0.990
LO55_1548
Glutamine amidotransferases class-II family protein.
    
 0.909
LO55_4649
Hypothetical protein.
 
  
 0.900
aceB
malate_syn_A: malate synthase A; Belongs to the malate synthase family.
  
 
 0.899
aceA
Isocit_lyase: isocitrate lyase.
     
 0.881
hppr
Hydroxyphenylpyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.859
hprA
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.859
eda
Eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein.
     
 0.855
LO55_1501
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
    
 0.854
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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