Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_594Dienelactone hydrolase family protein. (294 aa)    
Predicted Functional Partners:
LO55_364
Chlorophyllase family protein.
  
  
 
0.885
LO55_2571
Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein.
   
 
 0.694
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
 
   0.604
LO55_593
ZIP Zinc transporter family protein.
  
    0.576
LO55_595
Beta-lactamase family protein.
       0.548
nadK
ATP-NAD kinase family protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
    
   0.547
ndk
Nucleoside diphosphate kinase family protein; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
   0.543
LO55_3861
Ankyrin repeat family protein.
    
   0.529
LO55_4230
Ankyrin repeat family protein.
    
   0.529
LO55_4359
Dioxygenase family protein.
   
 
 0.440
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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