Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_602Hypothetical protein. (95 aa)    
Predicted Functional Partners:
LO55_603
Hypothetical protein; AIR synthase related, N-terminal domain protein.
 
     0.955
LO55_605
Nitrilase, sll0784 family; nitrile_sll0784: nitrilase, sll0784 family.
 
 
 0.955
LO55_604
Radical SAM superfamily protein.
 
     0.944
LO55_606
dsrE/DsrF-like family protein.
 
   
 0.931
LO55_607
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
     0.874
LO55_608
Acetyltransferase family protein.
 
     0.874
LO55_3438
NADH:flavin oxidoreductase / NADH oxidase family protein.
  
 0.743
LO55_1359
NADH:flavin oxidoreductase / NADH oxidase family protein.
    
 0.717
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.680
atpB
ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
    
   0.680
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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