Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_604Radical SAM superfamily protein. (367 aa)    
Predicted Functional Partners:
LO55_605
Nitrilase, sll0784 family; nitrile_sll0784: nitrilase, sll0784 family.
 
     0.952
LO55_606
dsrE/DsrF-like family protein.
 
   
 0.950
LO55_603
Hypothetical protein; AIR synthase related, N-terminal domain protein.
 
     0.945
LO55_602
Hypothetical protein.
 
     0.944
LO55_608
Acetyltransferase family protein.
 
   
 0.898
LO55_607
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
     0.877
LO55_609
Aminotransferase class I and II family protein.
 
     0.698
lipA
Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
     
 0.615
lipB
Lipoyl(octanoyl) transferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
     
  0.554
LO55_601
Hypothetical protein; uvrD/REP helicase N-terminal domain protein.
       0.515
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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