Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_605Nitrilase, sll0784 family; nitrile_sll0784: nitrilase, sll0784 family. (330 aa)    
Predicted Functional Partners:
LO55_602
Hypothetical protein.
 
 
 0.955
LO55_604
Radical SAM superfamily protein.
 
     0.952
LO55_603
Hypothetical protein; AIR synthase related, N-terminal domain protein.
 
   
 0.941
LO55_606
dsrE/DsrF-like family protein.
 
     0.940
LO55_607
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
 
 0.909
LO55_1548
Glutamine amidotransferases class-II family protein.
    
 0.907
LO55_608
Acetyltransferase family protein.
 
  
  0.899
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
 0.880
LO55_1602
Asparaginase family protein.
    
 0.862
argG
argG: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 0.862
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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