STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_609Aminotransferase class I and II family protein. (470 aa)    
Predicted Functional Partners:
LO55_1548
Glutamine amidotransferases class-II family protein.
     
  0.861
LO55_607
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
     0.783
pheA
CM_P2: chorismate mutase.
    
 0.765
LO55_608
Acetyltransferase family protein.
 
     0.764
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.715
LO55_604
Radical SAM superfamily protein.
 
     0.698
LO55_606
dsrE/DsrF-like family protein.
 
     0.696
LO55_605
Nitrilase, sll0784 family; nitrile_sll0784: nitrilase, sll0784 family.
 
     0.688
LO55_602
Hypothetical protein.
 
     0.674
LO55_1001
4Fe-4S dicluster domain protein.
    
  0.654
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.