STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_609Aminotransferase class I and II family protein. (470 aa)    
Predicted Functional Partners:
LO55_607
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
     0.784
pheA
CM_P2: chorismate mutase.
    
 0.782
LO55_608
Acetyltransferase family protein.
 
     0.765
LO55_604
Radical SAM superfamily protein.
 
     0.699
LO55_606
dsrE/DsrF-like family protein.
 
     0.697
LO55_605
Nitrilase, sll0784 family; nitrile_sll0784: nitrilase, sll0784 family.
 
     0.689
LO55_602
Hypothetical protein.
 
     0.676
LO55_603
Hypothetical protein; AIR synthase related, N-terminal domain protein.
 
     0.651
LO55_1409
Aminotransferase class IV family protein.
  
 0.541
LO55_2855
Aminotransferase class I and II family protein.
  
 0.491
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.