Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LO55_612Polyketide cyclase / dehydrase and lipid transport family protein. (181 aa)    
Predicted Functional Partners:
LO55_2062
3-demethylubiquinone-9 3-methyltransferase family protein.
  
     0.572
LO55_4171
Polyketide cyclase / dehydrase and lipid transport family protein.
  
     0.506
LO55_829
Hypothetical protein.
  
     0.488
LO55_882
Kinase domain protein.
  
     0.476
LO55_4172
Zinc-binding dehydrogenase family protein.
 
    0.474
LO55_611
Glutathione-dependent formaldehyde-activating enzyme family protein.
       0.463
LO55_3433
Eukaryotic DNA topoisomerase I, catalytic core family protein.
 
     0.458
LO55_956
Hypothetical protein.
  
    0.457
LO55_4728
Zinc-binding dehydrogenase family protein.
 
    0.436
LO55_131
PKD domain protein.
  
     0.422
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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