Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_63csbD-like family protein; Belongs to the UPF0337 (CsbD) family. (68 aa)    
Predicted Functional Partners:
LO55_3727
Hypothetical protein.
  
    0.779
LO55_2355
Hypothetical protein.
 
    0.710
LO55_4837
Hypothetical protein.
 
    0.689
LO55_3452
Hypothetical protein.
  
    0.623
LO55_1316
Acetyltransferase family protein.
  
     0.605
yihY-2
yihY_not_rbn: YihY family inner membrane domain protein.
 
    0.573
LO55_1317
Polysaccharide biosynthesis/export family protein.
  
    0.571
LO55_1767
Transglycosylase associated family protein.
  
  
 0.568
LO55_1312
Putative long-chain N-acyl amino acid synthase.
  
     0.556
LO55_4836
BON domain protein.
  
    0.554
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.