Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_636RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (414 aa)    
Predicted Functional Partners:
LO55_638
ftsX-like permease family protein.
 
 
 0.952
LO55_2646
ftsX-like permease family protein.
 
 
 0.876
LO55_637
ABC transporter family protein.
 
 
 0.872
LO55_633
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
     0.840
LO55_635
Response regulator.
 
     0.660
LO55_4943
acrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.659
LO55_1843
type_I_sec_TolC: type I secretion outer membrane, TolC family protein.
 
 0.653
LO55_4274
acrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.645
LO55_1778
acrB/AcrD/AcrF family protein.
 
  0.639
LO55_2574
ftsX-like permease family protein.
 
 
 0.638
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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