Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_65csbD-like family protein; Belongs to the UPF0337 (CsbD) family. (58 aa)    
Predicted Functional Partners:
LO55_3727
Hypothetical protein.
  
    0.779
LO55_3452
Hypothetical protein.
  
    0.623
LO55_66
Ribosomal L11 methyltransferase family protein.
       0.570
LO55_1767
Transglycosylase associated family protein.
  
  
 0.568
LO55_2355
Hypothetical protein.
  
    0.554
LO55_4836
BON domain protein.
  
    0.554
LO55_4837
Hypothetical protein.
  
    0.554
LO55_4847
BON domain protein.
  
    0.554
LO55_1493
BON domain protein.
  
    0.543
LO55_2356
BON domain protein.
  
    0.543
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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