STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_660Hypothetical protein. (88 aa)    
Predicted Functional Partners:
LO55_2770
Hypothetical protein.
  
     0.689
LO55_4843
Hypothetical protein.
  
     0.668
LO55_661
Hypothetical protein.
       0.661
LO55_2239
Hypothetical protein.
  
     0.621
LO55_4678
Hypothetical protein.
  
     0.522
LO55_736
Putative transmembrane protein.
  
     0.505
LO55_1234
Type II secretion system (T2SS), M family protein.
  
     0.497
LO55_2385
Phasin: phasin family domain protein.
  
     0.496
LO55_1235
gspL periplasmic domain protein.
  
     0.492
gspH
typeII_sec_gspH: type II secretion system protein H.
  
     0.479
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.