STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_663Polymer-forming cytoskeletal family protein. (133 aa)    
Predicted Functional Partners:
erpA
Iron-sulfur cluster assembly accessory family protein; Required for insertion of 4Fe-4S clusters.
       0.683
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
       0.596
fliS
fliS: flagellar protein FliS.
    
 
 0.575
fliS-2
fliS: flagellar protein FliS.
    
 
 0.575
fliN
fliN: flagellar motor switch protein FliN.
    
   0.570
LO55_259
Surface presentation of antigens family protein.
    
   0.570
LO55_2091
cheW-like domain protein.
 
     0.523
LO55_1691
Hypothetical protein.
   
    0.517
fimV
fimV_core: FimV N-terminal domain.
  
     0.473
LO55_2094
cheW-like domain protein.
 
     0.425
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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