STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_679lysM domain protein. (372 aa)    
Predicted Functional Partners:
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein.
 
 
 
 0.950
LO55_1044
Pilus assembly, PilO family protein.
 
   0.928
LO55_3781
Hypothetical protein.
  
   0.928
LO55_1045
Fimbrial assembly family protein.
  
 
   0.926
LO55_1046
pilM: type IV pilus assembly PilM family protein.
  
 
   0.925
LO55_3777
Putative tail lysozyme.
  
 
 0.899
LO55_3769
Hypothetical protein.
  
 
 0.871
LO55_3770
Phage tail sheath family protein.
  
 
 0.871
LO55_3778
Hypothetical protein.
  
 
 0.868
dprA
dprA: DNA protecting protein DprA.
       0.819
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.