Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_685Glutamine amidotransferases class-II family protein. (254 aa)    
Predicted Functional Partners:
egtD
egtD_ergothio: dimethylhistidine N-methyltransferase.
  
  
 0.809
LO55_2245
cys/Met metabolism PLP-dependent enzyme family protein.
  
 
 0.726
LO55_686
Hypothetical protein.
 
     0.602
egtB
egtB_TIGR03440: ergothioneine biosynthesis EgtB family protein.
  
 
 0.601
LO55_4484
Tyrosine kinase family protein.
  
 
 0.584
LO55_1808
Hypothetical protein.
  
 
 0.580
LO55_3068
Sulfatase-modifying factor enzyme 1 family protein.
  
 
 0.580
LO55_3737
Sulfatase-modifying factor enzyme 1 family protein.
  
 
 0.580
LO55_684
HDOD domain protein.
       0.495
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.