Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_720PTS system fructose IIA component family protein. (133 aa)    
Predicted Functional Partners:
LO55_719
PTS_HPr_: phosphocarrier, HPr family protein.
 
 
 0.994
LO55_1007
Band 3 cytoplasmic domain protein.
 
 
 0.903
LO55_5125
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.895
ptsP
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
 
   
 0.882
LO55_3322
pfkB carbohydrate kinase family protein.
    
 0.880
LO55_1775
pfkB carbohydrate kinase family protein.
    
 0.856
LO55_2104
Hypothetical protein; Phosphoglucomutase/phosphomannomutase, C-terminal domain protein.
    
 0.856
gshB
Glut_syn: glutathione synthase; Belongs to the prokaryotic GSH synthase family.
       0.826
LO55_456
SIS domain protein.
 
  
 0.757
LO55_1331
NDP-sugDHase: nucleotide sugar dehydrogenase family protein.
     
  0.738
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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