STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_727Membrane fusogenic activity family protein. (130 aa)    
Predicted Functional Partners:
LO55_989
SCP-2 sterol transfer family protein.
  
   
 0.686
LO55_728
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.664
lptC
lptC_YrbK: LPS export ABC transporter periplasmic protein LptC.
  
     0.624
LO55_726
Gcw_chp: conserved hypothetical family protein.
 
     0.595
ftsB
Septum formation initiator family protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.574
rfaE1-2
rfaE_dom_I: bifunctional protein RfaE, domain I.
  
  
  0.568
LO55_4048
Cytochrome C biogenesis transmembrane region family protein.
  
     0.568
holA
holA: DNA polymerase III, delta subunit.
  
     0.566
rfaE1
rfaE_dom_I: bifunctional protein RfaE, domain I.
  
  
  0.566
LO55_729
Invasion expression up-regulator, SirB family protein.
 
     0.565
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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