STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_732Peptidase M1 family protein. (1193 aa)    
Predicted Functional Partners:
LO55_733
ABC transporter family protein.
 
 
   0.949
LO55_673
ABC transporter family protein.
  
 
   0.792
LO55_5088
CBS domain protein.
    
  0.642
LO55_447
Trypsin-like peptidase domain protein.
  
  
  0.623
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase.
    
 
 0.545
LO55_2026
Alpha/beta hydrolase family protein.
  
 
   0.514
LO55_731
Putative transmembrane protein.
       0.509
LO55_3704
tonB dependent receptor family protein.
  
     0.494
LO55_1161
Zinc carboxypeptidase family protein.
  
     0.485
LO55_1909
Putative membrane associated hydrolase domain protein.
 
     0.478
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.