Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_758tonB dependent receptor family protein. (617 aa)    
Predicted Functional Partners:
LO55_1165
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
 
 
 0.821
LO55_2418
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
 
 
 0.774
LO55_242
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
 
 
 0.764
LO55_2082
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
 
 
 0.762
LO55_766
Periplasmic binding family protein.
 
   
 0.753
LO55_760
ABC transporter family protein.
 
   
 0.741
LO55_759
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.735
LO55_576
tonB-dependent Receptor Plug domain protein.
  
  
 0.700
cobO
cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
  
  
 0.690
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
  
  
 0.690
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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