STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_77Hypothetical protein. (449 aa)    
Predicted Functional Partners:
LO55_1850
Hypothetical protein.
  
     0.639
LO55_76
Hypothetical protein.
       0.493
LO55_1161
Zinc carboxypeptidase family protein.
  
     0.484
LO55_3015
AAA domain protein.
  
     0.456
LO55_4291
Alpha/beta hydrolase family protein.
  
     0.453
mobB
mobB: molybdopterin-guanine dinucleotide biosynthesis protein B.
       0.440
LO55_74
Putative general secretion pathway protein B.
       0.440
LO55_75
Putative peptidoglycan binding domain protein.
       0.440
LO55_72
Motility family protein.
       0.407
LO55_577
tonB dependent receptor family protein.
  
     0.406
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.