STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
LO55_78Putative N-acetylglucosamine kinase. (292 aa)    
Predicted Functional Partners:
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.977
LO55_80
SIS domain protein.
 
  
 0.905
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.
 
 0.828
LO55_869
Glycosyl hydrolase family 20, catalytic domain protein.
 
  
  0.773
LO55_81
Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein.
 
    0.761
LO55_3707
Glycosyl hydrolase family 20, catalytic domain protein.
 
  
  0.732
glmS
Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
 0.723
LO55_3706
Bacterial extracellular solute-binding family protein.
 
    0.711
LO55_874
Beta-lactamase family protein.
 
    0.711
LO55_1517
badF/BadG/BcrA/BcrD ATPase family protein.
  
  
 
0.708
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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