Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
LO55_793tonB dependent receptor family protein. (661 aa)    
Predicted Functional Partners:
LO55_792
merC mercury resistance family protein.
 
     0.696
LO55_4774
tonB dependent receptor family protein.
  
   
 0.674
LO55_3691
tonB dependent receptor family protein.
  
   
 0.669
LO55_3889
tonB dependent receptor family protein.
  
   
 0.655
LO55_1638
tonB dependent receptor family protein.
  
  
 0.620
LO55_4546
Hypothetical protein.
    
 
 0.598
LO55_2569
tonB dependent receptor family protein.
  
   
 0.570
LO55_305
tonB dependent receptor family protein.
  
  
  0.569
LO55_4119
tonB dependent receptor family protein.
  
  
  0.557
LO55_3070
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
  
 0.553
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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