STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_797PDZ domain protein. (606 aa)    
Predicted Functional Partners:
LO55_796
Amidohydrolases: amidohydrolase family protein.
       0.610
LO55_798
mobA-like NTP transferase domain protein.
       0.578
LO55_800
Disulfide bond isomerase family protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
     0.577
LO55_799
[2Fe-2S] binding domain protein.
       0.574
LO55_801
ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein.
       0.509
LO55_194
Hypothetical protein; OMP85_target: outer membrane insertion C-terminal signal domain protein.
  
     0.458
LO55_2890
Gram-negative porin family protein.
  
     0.451
LO55_1630
Gram-negative porin family protein.
  
     0.430
LO55_4980
Gram-negative porin family protein.
  
     0.416
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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