STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_798mobA-like NTP transferase domain protein. (192 aa)    
Predicted Functional Partners:
LO55_2407
xdhC Rossmann domain protein.
 
 
 0.951
LO55_799
[2Fe-2S] binding domain protein.
 
 
 0.934
xdhC
xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC.
  
 
 0.805
LO55_2322
[2Fe-2S] binding domain protein.
 
 
 0.718
LO55_3424
Hypothetical protein.
 
  
 0.717
LO55_3449
[2Fe-2S] binding domain protein.
 
 
 0.706
LO55_2882
[2Fe-2S] binding domain protein.
 
 
 0.699
LO55_5170
Bacterial regulatory helix-turn-helix, lysR family protein.
    
  0.694
LO55_800
Disulfide bond isomerase family protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
       0.692
LO55_2320
Molybdopterin-binding domain of aldehyde dehydrogenase family protein.
 
  
 0.673
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.