Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_805Tetratricopeptide repeat family protein. (626 aa)    
Predicted Functional Partners:
LO55_2199
Adenylate and Guanylate cyclase catalytic domain protein.
    
  0.667
ribB-2
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.655
LO55_1788
Hypothetical protein; 5'-3' exonuclease, C-terminal SAM fold family protein.
  
    0.523
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.523
LO55_804
Methyltransferase domain protein.
       0.512
LO55_3001
Sensory box protein.
 
  
 0.502
LO55_4555
Sensory box protein.
 
  
 0.478
LO55_3436
HAMP domain protein.
 
  
 0.467
LO55_3559
Sensory box protein.
  
  
 0.454
LO55_3075
Glutathione-dependent formaldehyde-activating enzyme family protein.
  
     0.447
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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