STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uvdEUvde: UV damage endonuclease UvdE. (302 aa)    
Predicted Functional Partners:
LO55_4840
Hypothetical protein.
  
     0.537
LO55_159
Metallopeptidase M24 family protein.
  
     0.511
LO55_161
GAF domain protein.
  
     0.501
LO55_2871
GAF domain protein.
  
     0.495
LO55_4537
Sensory box protein.
  
     0.480
LO55_807
Cysteine-rich secretory family protein.
       0.478
LO55_3464
HAMP domain protein.
 
     0.456
LO55_409
MGT: glycosyltransferase, MGT family protein.
  
     0.454
LO55_864
Hypothetical protein.
 
     0.454
LO55_111
rmlD substrate binding domain protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
     0.440
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.