STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_81Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein. (495 aa)    
Predicted Functional Partners:
LO55_874
Beta-lactamase family protein.
 
 0.990
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.821
LO55_80
SIS domain protein.
 
     0.803
anmK
Hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
  
 0.783
LO55_3707
Glycosyl hydrolase family 20, catalytic domain protein.
    
 0.774
LO55_1156
Glycosyltransferase 36 associated family protein.
    
 0.763
LO55_78
Putative N-acetylglucosamine kinase.
 
    0.761
LO55_1802
Ecdysteroid kinase family protein.
    
 0.724
LO55_4204
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein.
  
  
 0.711
LO55_1518
N-acetylmuramoyl-L-alanine amidase family protein.
 
  
 0.699
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.