STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_81Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein. (495 aa)    
Predicted Functional Partners:
LO55_874
Beta-lactamase family protein.
 
 0.984
LO55_3707
Glycosyl hydrolase family 20, catalytic domain protein.
    
 0.861
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.821
LO55_80
SIS domain protein.
 
     0.806
anmK
Hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
  
 0.791
LO55_78
Putative N-acetylglucosamine kinase.
 
    0.778
LO55_1156
Glycosyltransferase 36 associated family protein.
    
 0.766
LO55_869
Glycosyl hydrolase family 20, catalytic domain protein.
    
 0.735
LO55_338
Penicillin binding transpeptidase domain protein.
     
 0.727
LO55_1518
N-acetylmuramoyl-L-alanine amidase family protein.
 
  
 0.707
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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