STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_815NLPA lipofamily protein; Belongs to the nlpA lipoprotein family. (281 aa)    
Predicted Functional Partners:
LO55_813
ABC transporter family protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 
 0.999
LO55_814
Binding--dependent transport system inner membrane component family protein.
 0.999
LO55_816
FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family protein.
       0.794
LO55_2730
cys/Met metabolism PLP-dependent enzyme family protein.
  
    0.759
LO55_4337
OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein.
  
    0.759
LO55_817
ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.
  
  
 0.723
LO55_812
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein.
       0.676
phnE
phnE: phosphonate ABC transporter, permease protein PhnE.
  
  
  0.595
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
  
 0.571
LO55_3483
Bacterial extracellular solute-binding s, 3 family protein.
 
  
 0.567
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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