Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_818Binding--dependent transport system inner membrane component family protein. (245 aa)    
Predicted Functional Partners:
LO55_817
ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.
 
 0.998
LO55_819
ABC transporter family protein.
 
 0.993
LO55_2919
ABC transporter family protein.
 
 0.991
ssuE
FMN_reduc_SsuE: FMN reductase.
 
 
  0.985
LO55_2053
Bacterial extracellular solute-binding s, 3 family protein.
 
 0.978
LO55_2055
ABC transporter family protein.
 
 0.969
LO55_2627
ntrCD: nitrate ABC transporter, ATP-binding s C and D family protein.
 
 0.969
ssuD
Alkanesulfonate monooxygenase, FMNH(2)-dependent; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
 
 0.968
LO55_4928
ntrCD: nitrate ABC transporter, ATP-binding s C and D family protein.
 
 0.967
LO55_2918
NMT1-like family protein.
  
 0.957
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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