STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_820Bacterial transferase hexapeptide family protein. (309 aa)    
Predicted Functional Partners:
cysK
cysK: cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
 0.994
cysM
cysM: cysteine synthase B; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
 0.993
LO55_3743
Pyridoxal-phosphate dependent enzyme family protein.
 
 0.977
LO55_5088
CBS domain protein.
 
 0.970
LO55_1349
EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase family protein.
  
 
 0.870
LO55_5148
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.870
cysS
cysS: cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.862
LO55_5089
cys/Met metabolism PLP-dependent enzyme family protein.
  
 
 0.859
LO55_4297
Sda_mono: L-serine ammonia-lyase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.844
cysE
cysE: serine O-acetyltransferase.
  
  
 
0.838
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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