STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_83NADPH-dependent FMN reductase family protein. (357 aa)    
Predicted Functional Partners:
LO55_2641
Ferritin-like domain protein; Belongs to the Dps family.
  
  
 0.641
LO55_2421
Hypothetical protein; prkA serine kinase C-terminal domain protein.
  
    0.594
LO55_2223
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.540
LO55_84
Putative membrane protein.
       0.522
LO55_85
Hypothetical protein.
       0.522
LO55_3774
Hypothetical protein.
   
  
 0.477
LO55_679
lysM domain protein.
   
  
 0.477
LO55_2208
Methyltransferase regulatory, predicted domain protein.
    
  0.471
LO55_2355
Hypothetical protein.
  
    0.465
LO55_1990
NHL repeat family protein.
 
     0.462
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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