Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_834A circularly permuted ATPgrasp family protein. (470 aa)    
Predicted Functional Partners:
LO55_833
Hypothetical protein; A predicted alpha-helical domain with a conserved ER motif family protein.
    0.991
LO55_838
Hypothetical protein; Bacterial transglutaminase-like N-terminal region family protein.
 
    0.925
LO55_835
Hypothetical protein; Bacterial transglutaminase-like N-terminal region family protein.
 
    0.905
LO55_2037
Carboxylate-amine ligase, YbdK family protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
   
  0.902
LO55_836
A circularly permuted ATPgrasp family protein.
 
   
0.890
LO55_3929
Carboxylate-amine ligase, YbdK family protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
   
  0.868
LO55_1548
Glutamine amidotransferases class-II family protein.
     
  0.861
LO55_4259
Hydantoinase/oxoprolinase family protein.
     
  0.739
LO55_832
Hypothetical protein.
 
     0.533
gshB
Glut_syn: glutathione synthase; Belongs to the prokaryotic GSH synthase family.
    
  0.450
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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