STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_834A circularly permuted ATPgrasp family protein. (470 aa)    
Predicted Functional Partners:
LO55_833
Hypothetical protein; A predicted alpha-helical domain with a conserved ER motif family protein.
  
 0.992
LO55_2037
Carboxylate-amine ligase, YbdK family protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
   
  0.919
LO55_838
Hypothetical protein; Bacterial transglutaminase-like N-terminal region family protein.
 
  
 0.916
LO55_836
A circularly permuted ATPgrasp family protein.
 
  
0.907
LO55_3929
Carboxylate-amine ligase, YbdK family protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
   
  0.890
LO55_835
Hypothetical protein; Bacterial transglutaminase-like N-terminal region family protein.
 
  
 0.888
gshB
Glut_syn: glutathione synthase; Belongs to the prokaryotic GSH synthase family.
    
  0.568
pepA
Hypothetical protein; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
    
  0.532
LO55_832
Hypothetical protein.
 
     0.532
ggt
G_glut_trans: gamma-glutamyltransferase.
    
  0.455
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.