Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LO55_841Von Willebrand factor type A domain protein. (813 aa)    
Predicted Functional Partners:
LO55_839
PEP_exosort: PEP-CTERM -sorting domain protein.
       0.714
LO55_840
Putative membrane protein.
       0.714
LO55_4364
Hypothetical protein.
   
 
 0.706
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
   0.688
LO55_3115
Hypothetical protein.
  
 
 0.686
LO55_1413
N-acetylmuramoyl-L-alanine amidase family protein.
  
     0.671
LO55_1393
MAPEG family protein.
  
     0.663
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
    
 0.654
LO55_4254
Peptidase S41 family protein.
  
     0.615
rplV
Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
  
 
   0.614
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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